MolNFT v1 · #119371 · protein
The complexity of the ruminococcus flavefaciens cellulosome reflects an expansion in glycan recognition
5FU4 · CBM74-RFGH5: “The complexity of the ruminococcus flavefaciens cellulosome reflects an expansion in glycan recognition”. X-ray diffraction, 1 ligand (BMA), 1 pocket (best druggability 0.46). MolNFT v1 #119371 on GenesisL1: 3D…
- PDB
- 5FU4
- Type
- protein
- Length
- 184 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- CBM74-RFGH5
- Ligands
- BMA
- Pockets
- 1 · best druggability 0.46
Structure
x-ray diffraction · 2 distinct chains · 3% helix, 64% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | CBM74-RFGH5 | protein | 92 | 3% helix, 63% strand | — |
| B | CBM74-RFGH5 | protein | 92 | 3% helix, 64% strand | — |
Ligands and binding sites
- BMA · beta-D-mannopyranose · sugar · 8 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 164 | 0.46 | 0.76 | 29 | empty |
Interfaces
1 interface between chains.
- A–B · 382 Ų buried · 4 hydrogen bonds · protein-protein
Compared structures
- 5FU4 · The complexity of the Ruminococcus flavefaciens cellulosome reflects an expansion in… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 5FU4 · PDBe 5FU4
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