MolNFT v1 · #119346 · protein
Crystal structure of PIF1 helicase from bacteroides apo form
5FTD · Tpr domain protein: “Crystal structure of PIF1 helicase from bacteroides apo form”. X-ray diffraction, 1 ligand (PO4), 4 pockets (best druggability 0.79). MolNFT v1 #119346 on GenesisL1: 3D structure, binding sites and pockets in…
- PDB
- 5FTD
- Type
- protein
- Length
- 429 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Tpr domain protein
- EC
- 3.6.4.12
- UniProt
- D7K0H3
- Ligands
- PO4
- Pockets
- 4 · best druggability 0.79
Structure
x-ray diffraction · 1 distinct chain · 33% helix, 24% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Tpr domain protein (EC 3.6.4.12) | protein | 429 | 33% helix, 24% strand | D7K0H3 |
Ligands and binding sites
- PO4 · Phosphate ion · ion · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
4 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 1089 | 0.79 | 0.80 | 111 | PO4 |
| 2 | 126 | 0.61 | 0.86 | 24 | empty |
| 3 | 85 | 0.42 | 0.79 | 19 | empty |
| 4 | 103 | 0.38 | 0.75 | 18 | empty |
Compared structures
- 5FTD · Crystal structure of Pif1 helicase from Bacteroides apo form · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt D7K0H3
- Elsewhere: RCSB PDB 5FTD · PDBe 5FTD · UniProt D7K0H3
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