MolNFT v1 · #119312 · protein
Structure of tectonin 2 from laccaria bicolor in complex with allyl- ALPHA_4-methyl-mannoside
5FSC: “Structure of tectonin 2 from laccaria bicolor in complex with allyl- ALPHA_4-methyl-mannoside”. X-ray diffraction, 2 ligands (G8Z, MG), 4 pockets (best druggability 0.37). MolNFT v1 #119312 on GenesisL1: 3D structure, binding sites…
- PDB
- 5FSC
- Type
- protein
- Length
- 448 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Tectonin 2
- UniProt
- B0CZL6
- Ligands
- G8Z, MG
- Pockets
- 4 · best druggability 0.37
Structure
x-ray diffraction · 2 distinct chains · 0% helix, 47% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Tectonin 2 | protein | 226 | 0% helix, 46% strand | B0CZL6 |
| B | Tectonin 2 | protein | 222 | 0% helix, 47% strand | B0CZL6 |
Ligands and binding sites
- G8Z · prop-2-en-1-yl 4-O-methyl-alpha-D-mannopyranoside · ligand · 9 copies · chains A, B
- MG · Magnesium ion · metal · 2 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
4 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 75 | 0.37 | 0.77 | 14 | empty |
| 2 | 56 | 0.35 | 0.79 | 18 | empty |
| 3 | 59 | 0.31 | 0.76 | 16 | empty |
| 4 | 62 | 0.28 | 0.74 | 16 | empty |
Interfaces
1 interface between chains.
- A–B · 1033 Ų buried · 28 hydrogen bonds · protein-protein
Compared structures
- 5FSC · Structure of tectonin 2 from Laccaria bicolor in complex with allyl… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt B0CZL6
- Elsewhere: RCSB PDB 5FSC · PDBe 5FSC · UniProt B0CZL6
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