MolNFT v1 · #119288 · protein

Semet crystal structure of erwinia amylovora amyr amylovoran repressor, a member of the ybjn protein family

5FRK: “Semet crystal structure of erwinia amylovora amyr amylovoran repressor, a member of the ybjn protein family”. X-ray diffraction, 3 pockets (best druggability 0.73). MolNFT v1 #119288 on GenesisL1: 3D structure, binding sites and…

PDB: 5FRK
Type: protein
Length: 289 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Amyr
UniProt: D4I047
Pockets: 3 · best druggability 0.73

Structure

x-ray diffraction · 2 distinct chains · 38% helix, 29% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Amyr	protein	145	38% helix, 29% strand	D4I047
B	Amyr	protein	144	38% helix, 28% strand	D4I047

Pockets

3 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	69	0.73	0.98	26	empty
2	101	0.40	0.76	16	empty
3	98	0.38	0.75	16	empty

Interfaces

1 interface between chains.

A–B · 1430 Å² buried · 20 hydrogen bonds · protein-protein

Modifications

Observed in the structure: 15 modified, 2 disulfide (engineered, disulfide).

Compared structures

5FRK · SeMet crystal structure of Erwinia amylovora AmyR amylovoran repressor, a member of the… · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt D4I047
Elsewhere: RCSB PDB 5FRK · PDBe 5FRK · UniProt D4I047

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