MolNFT v1 · #119137 · protein + RNA

Electron cryo-microscopy of filamentous flexible virus pepmv (pepino mosaic virus)

5FN1 · Coat protein: “Electron cryo-microscopy of filamentous flexible virus pepmv (pepino mosaic virus)”. Electron microscopy, 1 pocket (best druggability 0.43). MolNFT v1 #119137 on GenesisL1: 3D structure, binding sites and pockets in…

PDB: 5FN1
Type: protein + RNA
Length: 222 residues
Chains: 2
Method: electron microscopy
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Coat protein; 5'-R(*UP*UP*UP*UP*UP)-3'
UniProt: Q71FK2
Pockets: 1 · best druggability 0.43

Structure

electron microscopy · 2 distinct chains · 43% helix, 1% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Coat protein	protein	217	43% helix, 1% strand	Q71FK2
B	5'-R(UPUPUPUP*UP)-3'	rna	5	—	—

Pockets

1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	109	0.43	0.78	15	empty

Interfaces

1 interface between chains.

A–B · 652 Å² buried · 12 hydrogen bonds · protein-nucleic

Compared structures

5FN1 · Electron cryo-microscopy of filamentous flexible virus PepMV (Pepino Mosaic Virus) · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q71FK2
Elsewhere: RCSB PDB 5FN1 · PDBe 5FN1 · UniProt Q71FK2

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