MolNFT v1 · #119039 · RNA
SAM-I riboswitch bearing the H. marismortui kt-7 variant 3BN is gg
5FK2: “SAM-I riboswitch bearing the H. marismortui kt-7 variant 3BN is gg”. X-ray diffraction, 2 ligands (SAM, BA), 2 pockets (best druggability 0.80). MolNFT v1 #119039 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 5FK2
- Type
- RNA
- Length
- 94 nucleotides
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- SAM-I riboswitch
- Ligands
- SAM, BA
- Pockets
- 2 · best druggability 0.80
Structure
x-ray diffraction · 1 distinct chain.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | SAM-I riboswitch | rna | 94 | — | — |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 976 | 0.80 | 0.83 | 58 | SAM, BA |
| 2 | 78 | 0.35 | 0.77 | 11 | BA |
Compared structures
- 5FK2 · SAM-I riboswitch bearing the H. marismortui Kt-7 variant 3bn is GG · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 5FK2 · PDBe 5FK2
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