MolNFT v1 · #119027 · protein
Structural and functional analysis of a lytic polysaccharide monooxygenase important for efficient utilization of chitin in cellvibrio japonicus
5FJQ · Carbohydrate binding protein, putative, CPB33A: “Structural and functional analysis of a lytic polysaccharide monooxygenase important for efficient…”. X-ray diffraction, 1 ligand (CU), 2 pockets (best druggability 0.67). MolNFT v1…
- PDB
- 5FJQ
- Type
- protein
- Length
- 540 residues
- Chains
- 3
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Carbohydrate binding protein, putative, CPB33A
- UniProt
- B3PJ79
- Ligands
- CU
- Pockets
- 2 · best druggability 0.67
Structure
x-ray diffraction · 1 distinct chain · 21% helix, 34% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B, C | Carbohydrate binding protein, putative, CPB33A | protein | 180 | 21% helix, 34% strand | B3PJ79 |
Ligands and binding sites
- CU · Copper (II) ion · metal · 3 copies · chains A, B, C
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 769 | 0.67 | 0.75 | 73 | empty |
| 2 | 162 | 0.51 | 0.79 | 29 | empty |
Interfaces
3 interfaces between chains.
- B–C · 366 Ų buried · 7 hydrogen bonds · protein-protein
- A–B · 335 Ų buried · 0 hydrogen bonds · protein-protein
- A–C · 64 Ų buried · 0 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 6 disulfide (disulfide).
Compared structures
- 5FJQ · Structural and functional analysis of a lytic polysaccharide monooxygenase important for… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt B3PJ79
- Elsewhere: RCSB PDB 5FJQ · PDBe 5FJQ · UniProt B3PJ79
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