MolNFT v1 · #118880 · protein
Copm in the ag-bound form (by soaking)
5FFE: “Copm in the ag-bound form (by soaking)”. X-ray diffraction, 1 ligand (AG), 1 pocket (best druggability 0.62). MolNFT v1 #118880 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 5FFE
- Type
- protein
- Length
- 271 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Copm
- UniProt
- A0A0F6QDN6
- Ligands
- AG
- Pockets
- 1 · best druggability 0.62
Structure
x-ray diffraction · 2 distinct chains · 82% helix, 0% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Copm | protein | 135 | 82% helix, 0% strand | A0A0F6QDN6 |
| B | Copm | protein | 136 | 82% helix, 0% strand | A0A0F6QDN6 |
Ligands and binding sites
- AG · Silver ion · metal · 12 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 542 | 0.62 | 0.75 | 48 | empty |
Interfaces
1 interface between chains.
- A–B · 391 Ų buried · 7 hydrogen bonds · protein-protein
Compared structures
- 5FFE · CopM in the Ag-bound form (by soaking) · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A0A0F6QDN6
- Elsewhere: RCSB PDB 5FFE · PDBe 5FFE · UniProt A0A0F6QDN6
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