MolNFT v1 · #118851 · protein
Copm in the CU(I)-bound form
5FEJ: “Copm in the CU(I)-bound form”. X-ray diffraction, 1 ligand (CU1), 2 pockets (best druggability 0.65). MolNFT v1 #118851 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 5FEJ
- Type
- protein
- Length
- 554 residues
- Chains
- 4
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Copm
- UniProt
- A0A0F6QDN6
- Ligands
- CU1
- Pockets
- 2 · best druggability 0.65
Structure
x-ray diffraction · 2 distinct chains · 81% helix, 0% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, C, D | Copm | protein | 138 | 81% helix, 0% strand | A0A0F6QDN6 |
| B | Copm | protein | 140 | 80% helix, 0% strand | A0A0F6QDN6 |
Ligands and binding sites
- CU1 · Copper (I) ion · metal · 8 copies · chains A, B, C, D
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 398 | 0.65 | 0.79 | 43 | empty |
| 2 | 93 | 0.37 | 0.75 | 21 | empty |
Interfaces
2 interfaces between chains.
- A–D · 623 Ų buried · 0 hydrogen bonds · protein-protein
- B–C · 400 Ų buried · 4 hydrogen bonds · protein-protein
Compared structures
- 5FEJ · CopM in the Cu(I)-bound form · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A0A0F6QDN6
- Elsewhere: RCSB PDB 5FEJ · PDBe 5FEJ · UniProt A0A0F6QDN6
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