MolNFT v1 · #118805 · protein
Crystal structure of comr from streptococcus suis
5FD4: “Crystal structure of comr from streptococcus suis”. X-ray diffraction, 7 pockets (best druggability 0.68). MolNFT v1 #118805 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 5FD4
- Type
- protein
- Length
- 618 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Comr
- UniProt
- A4VSD6
- Pockets
- 7 · best druggability 0.68
Structure
x-ray diffraction · 1 distinct chain · 68% helix, 0% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | Comr | protein | 309 | 68% helix, 0% strand | A4VSD6 |
Pockets
7 pockets found on a 1 Å grid, 5 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 622 | 0.68 | 0.77 | 60 | empty |
| 2 | 581 | 0.65 | 0.76 | 68 | empty |
| 3 | 391 | 0.61 | 0.76 | 39 | empty |
| 4 | 296 | 0.57 | 0.77 | 30 | empty |
| 5 | 267 | 0.53 | 0.75 | 39 | empty |
Interfaces
1 interface between chains.
- A–B · 895 Ų buried · 8 hydrogen bonds · protein-protein
Compared structures
- 5FD4 · Crystal Structure of ComR from Streptococcus suis · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A4VSD6
- Elsewhere: RCSB PDB 5FD4 · PDBe 5FD4 · UniProt A4VSD6
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