MolNFT v1 · #118691 · protein

Crystal structure study of anthrone oxidase-like protein

5F9P: “Crystal structure study of anthrone oxidase-like protein”. X-ray diffraction, 5 pockets (best druggability 0.76). MolNFT v1 #118691 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 5F9P
Type: protein
Length: 478 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Anthrone oxidase-like protein
UniProt: Q6VMI5
Pockets: 5 · best druggability 0.76

Structure

x-ray diffraction · 2 distinct chains · 34% helix, 37% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Anthrone oxidase-like protein	protein	241	34% helix, 37% strand	Q6VMI5
B	Anthrone oxidase-like protein	protein	237	35% helix, 37% strand	Q6VMI5

Ligands and binding sites

GOL · Glycerol · additive · 2 copies · chains A, B

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

5 pockets found on a 1 Å grid, 5 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	76	0.76	0.98	22	empty
2	56	0.69	0.96	19	empty
3	601	0.66	0.77	57	empty
4	243	0.59	0.79	27	GOL
5	212	0.57	0.79	25	GOL

Interfaces

1 interface between chains.

A–B · 123 Å² buried · 0 hydrogen bonds · protein-protein

Modifications

Observed in the structure: 6 modified (engineered).

Compared structures

5F9P · Crystal structure study of anthrone oxidase-like protein · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q6VMI5
Elsewhere: RCSB PDB 5F9P · PDBe 5F9P · UniProt Q6VMI5

GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.