MolNFT v1 · #118682 · protein
PNGFP1.5-Y.CRO: circularly permuted green fluorescent protein (with a tyrosine-derived chromophore)
5F9G · PNGFP1.5-Y.CRO,GREEN fluorescent protein: “PNGFP1.5-Y.CRO: circularly permuted green fluorescent protein (with a tyrosine-derived chromophore)”. X-ray diffraction, 1 ligand (CRO), 1 pocket (best druggability 0.73). MolNFT v1 #118682…
- PDB
- 5F9G
- Type
- protein
- Length
- 228 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- PNGFP1.5-Y.CRO,GREEN fluorescent protein
- UniProt
- P42212
- Ligands
- CRO
- Pockets
- 1 · best druggability 0.73
Structure
x-ray diffraction · 1 distinct chain · 7% helix, 51% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | PNGFP1.5-Y.CRO,GREEN fluorescent protein | protein | 228 | 7% helix, 51% strand | P42212 |
Ligands and binding sites
- CRO · {2-[(1R,2R)-1-amino-2-hydroxypropyl]-4-(4-hydroxybenzylidene)-5-oxo-4,5-dihydro-1H-imidazol-1-yl}acetic acid · ligand · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 351 | 0.73 | 0.84 | 44 | CRO |
Modifications
Observed in the structure: 3 cofactor (chromophore).
Compared structures
- 5F9G · pnGFP1.5-Y.Cro: circularly permuted green fluorescent protein (with a tyrosine-derived… · the same entry in another collection · chain A against A, TM-score 1.00
- P42212 · AlphaFold monomer V2.0 prediction for green fluorescent protein (P42212) · a predicted model of the same protein · chain A against A, TM-score 0.61
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P42212
- Elsewhere: RCSB PDB 5F9G · PDBe 5F9G · UniProt P42212
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