MolNFT v1 · #118629 · protein
ABC substrate-binding protein LMO0181 from listeria monocytogenes in complex with cycloalternan
5F7V · LMO0181 protein: “ABC substrate-binding protein LMO0181 from listeria monocytogenes in complex with cycloalternan”. X-ray diffraction, 1 ligand (GLC), 3 pockets (best druggability 0.74). MolNFT v1 #118629 on GenesisL1: 3D structure…
- PDB
- 5F7V
- Type
- protein
- Length
- 388 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- LMO0181 protein
- UniProt
- Q8YAE9
- Ligands
- GLC
- Pockets
- 3 · best druggability 0.74
Structure
x-ray diffraction · 1 distinct chain · 47% helix, 19% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | LMO0181 protein | protein | 388 | 47% helix, 19% strand | Q8YAE9 |
Ligands and binding sites
- GLC · alpha-D-glucopyranose · sugar · 4 copies · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
3 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 803 | 0.74 | 0.78 | 71 | GLC |
| 2 | 69 | 0.32 | 0.74 | 14 | empty |
| 3 | 77 | 0.31 | 0.74 | 19 | empty |
Compared structures
- 5F7V · ABC substrate-binding protein Lmo0181 from Listeria monocytogenes in complex with… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q8YAE9
- Elsewhere: RCSB PDB 5F7V · PDBe 5F7V · UniProt Q8YAE9
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