MolNFT v1 · #118519 · protein
Protruding domain of GII.17 norovirus SAITAMA/T87
5F4J · Protruding domain of GII.17 norovirus capsid: “Protruding domain of GII.17 norovirus SAITAMA/T87”. X-ray diffraction, 3 pockets (best druggability 0.37). MolNFT v1 #118519 on GenesisL1: 3D structure, binding sites and pockets in…
- PDB
- 5F4J
- Type
- protein
- Length
- 306 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Protruding domain of GII.17 norovirus capsid
- UniProt
- A0A076JB57
- Pockets
- 3 · best druggability 0.37
Structure
x-ray diffraction · 1 distinct chain · 6% helix, 35% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Protruding domain of GII.17 norovirus capsid | protein | 306 | 6% helix, 35% strand | A0A076JB57 |
Ligands and binding sites
- EDO · 1,2-ethanediol · additive · 2 copies · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
3 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 60 | 0.37 | 0.79 | 18 | empty |
| 2 | 80 | 0.33 | 0.74 | 22 | EDO |
| 3 | 59 | 0.30 | 0.75 | 13 | empty |
Compared structures
- 5F4J · Protruding domain of GII.17 norovirus Saitama/T87 · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A0A076JB57
- Elsewhere: RCSB PDB 5F4J · PDBe 5F4J · UniProt A0A076JB57
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.