MolNFT v1 · #118430 · protein
Crystal structure of SERINE/THREONINE phosphatase STP1 from staphylococcus aureus
5F1M · Phosphorylated protein phosphatase: “Crystal structure of SERINE/THREONINE phosphatase STP1 from staphylococcus aureus”. X-ray diffraction, 1 ligand (MN), 2 pockets (best druggability 0.55). MolNFT v1 #118430 on GenesisL1: 3D…
- PDB
- 5F1M
- Type
- protein
- Length
- 254 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Phosphorylated protein phosphatase
- EC
- 3.1.3.16
- UniProt
- Q9RL81
- Ligands
- MN
- Pockets
- 2 · best druggability 0.55
Structure
x-ray diffraction · 1 distinct chain · 33% helix, 26% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Phosphorylated protein phosphatase (EC 3.1.3.16) | protein | 254 | 33% helix, 26% strand | Q9RL81 |
Ligands and binding sites
- MN · Manganese (II) ion · metal · 4 copies · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 169 | 0.55 | 0.81 | 22 | empty |
| 2 | 102 | 0.41 | 0.77 | 18 | empty |
Compared structures
- 5F1M · Crystal structure of Serine/threonine phosphatase Stp1 from Staphylococcus aureus · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9RL81
- Elsewhere: RCSB PDB 5F1M · PDBe 5F1M · UniProt Q9RL81
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