MolNFT v1 · #11834 · protein

Crystal structure of recombinant human serum retinol-binding protein at 1.7 a resolution

1JYD · Plasma retinol-binding protein: “Crystal structure of recombinant human serum retinol-binding protein at 1.7 a resolution”. X-ray diffraction, 2 pockets (best druggability 0.82). MolNFT v1 #11834 on GenesisL1: 3D structure, binding…

PDB: 1JYD
Type: protein
Length: 174 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Plasma retinol-binding protein
UniProt: P02753
Pockets: 2 · best druggability 0.82

Structure

x-ray diffraction · 1 distinct chain · 11% helix, 48% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Plasma retinol-binding protein	protein	174	11% helix, 48% strand	P02753

Ligands and binding sites

GOL · Glycerol · additive · 6 copies · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	146	0.82	0.98	25	GOL
2	53	0.31	0.76	12	empty

Modifications

Observed in the structure: 3 disulfide (disulfide).

Compared structures

1JYD · Crystal Structure of Recombinant Human Serum Retinol-Binding Protein at 1.7 A Resolution · the same entry in another collection · chain A against A, TM-score 1.00
P02753 · AlphaFold monomer V2.0 prediction for retinol-binding protein 4 (P02753) · a predicted model of the same protein · chain A against A, TM-score 0.98

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P02753
Elsewhere: RCSB PDB 1JYD · PDBe 1JYD · UniProt P02753

GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.