MolNFT v1 · #118333 · DNA
Racemic crystal structures of pribnow box consensus promoter sequence (pnna)
5EYQ · Pribnow box template strand: “Racemic crystal structures of pribnow box consensus promoter sequence (pnna)”. X-ray diffraction, 1 ligand (NA). MolNFT v1 #118333 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 5EYQ
- Type
- DNA
- Length
- 24 nucleotides
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Pribnow box template strand; Complementary strand
- Ligands
- NA
Structure
x-ray diffraction · 2 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Pribnow box template strand | dna | 12 | — | — |
| B | Complementary strand | dna | 12 | — | — |
Ligands and binding sites
- NA · Sodium ion · metal · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Interfaces
1 interface between chains.
- A–B · 1350 Ų buried · 456 hydrogen bonds · nucleic-nucleic
Compared structures
- 5EYQ · Racemic crystal structures of Pribnow box consensus promoter sequence (Pnna) · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 5EYQ · PDBe 5EYQ
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