MolNFT v1 · #11832 · protein

Crystal structure of rubrerythrin

1JYB: “Crystal structure of rubrerythrin”. X-ray diffraction, 2 ligands (FE, ZN), 1 pocket (best druggability 0.45). MolNFT v1 #11832 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 1JYB
Type: protein
Length: 190 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Rubrerythrin
UniProt: P24931
Ligands: FE, ZN
Pockets: 1 · best druggability 0.45

Structure

x-ray diffraction · 1 distinct chain · 60% helix, 11% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Rubrerythrin	protein	190	60% helix, 11% strand	P24931

Ligands and binding sites

FE · Fe (III) ion · metal · 2 copies · chains A
ZN · Zinc ion · metal · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	114	0.45	0.78	26	empty

Compared structures

1JYB · Crystal structure of Rubrerythrin · the same entry in another collection · chain A against A, TM-score 1.00
P24931 · AlphaFold monomer V2.0 prediction for rubrerythrin (P24931) · a predicted model of the same protein · chain A against A, TM-score 0.99

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P24931
Elsewhere: RCSB PDB 1JYB · PDBe 1JYB · UniProt P24931

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