MolNFT v1 · #11826 · protein
RNase-related protein from calystegia sepium
1JY5 · Calseprrp: “RNase-related protein from calystegia sepium”. X-ray diffraction, 4 pockets (best druggability 0.73). MolNFT v1 #11826 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 1JY5
- Type
- protein
- Length
- 406 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Calseprrp
- UniProt
- Q9M7C7
- Pockets
- 4 · best druggability 0.73
Structure
x-ray diffraction · 1 distinct chain · 32% helix, 23% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | Calseprrp | protein | 203 | 32% helix, 23% strand | Q9M7C7 |
Pockets
4 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 1057 | 0.73 | 0.76 | 103 | empty |
| 2 | 110 | 0.46 | 0.79 | 27 | empty |
| 3 | 60 | 0.30 | 0.75 | 17 | empty |
| 4 | 50 | 0.23 | 0.72 | 15 | empty |
Interfaces
1 interface between chains.
- A–B · 370 Ų buried · 5 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 12 disulfide (disulfide).
Compared structures
- 1JY5 · RNase-related protein from Calystegia sepium · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9M7C7
- Elsewhere: RCSB PDB 1JY5 · PDBe 1JY5 · UniProt Q9M7C7
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