MolNFT v1 · #118201 · protein

Hypothetical protein SF216 from shigella flexneri 5A M90T

5EUR · Uncharacterized protein: “Hypothetical protein SF216 from shigella flexneri 5A M90T”. X-ray diffraction, 2 ligands (MG, SO4), 4 pockets (best druggability 0.74). MolNFT v1 #118201 on GenesisL1: 3D structure, binding sites and…

PDB: 5EUR
Type: protein
Length: 334 residues
Chains: 3
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Uncharacterized protein
UniProt: A0A0F6M9P9
Ligands: MG, SO4
Pockets: 4 · best druggability 0.74

Structure

x-ray diffraction · 3 distinct chains · 57% helix, 10% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Uncharacterized protein	protein	113	59% helix, 10% strand	A0A0F6M9P9
B	Uncharacterized protein	protein	111	57% helix, 10% strand	A0A0F6M9P9
C	Uncharacterized protein	protein	110	54% helix, 10% strand	A0A0F6M9P9

Ligands and binding sites

MG · Magnesium ion · metal · chains A, B, C
SO4 · Sulfate ion · ion · chains A, B, C

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

4 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	60	0.74	0.99	15	MG, SO4
2	93	0.39	0.77	19	empty
3	101	0.37	0.75	19	empty
4	72	0.33	0.75	17	empty

Interfaces

3 interfaces between chains.

A–C · 1049 Å² buried · 15 hydrogen bonds · protein-protein
A–B · 1013 Å² buried · 16 hydrogen bonds · protein-protein
B–C · 1004 Å² buried · 19 hydrogen bonds · protein-protein

Compared structures

5EUR · Hypothetical protein SF216 from shigella flexneri 5a M90T · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt A0A0F6M9P9
Elsewhere: RCSB PDB 5EUR · PDBe 5EUR · UniProt A0A0F6M9P9

GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.