MolNFT v1 · #118016 · protein
Crystal structure of glycerol trinitrate reductase xdpb from agrobacterium sp. R89-1 (apo form)
5EPD: “Crystal structure of glycerol trinitrate reductase xdpb from agrobacterium sp. R89-1 (apo form)”. X-ray diffraction, 1 pocket (best druggability 0.57). MolNFT v1 #118016 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 5EPD
- Type
- protein
- Length
- 348 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Glycerol trinitrate reductase
- UniProt
- A0A0A0VDJ9
- Pockets
- 1 · best druggability 0.57
Structure
x-ray diffraction · 1 distinct chain · 36% helix, 16% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Glycerol trinitrate reductase | protein | 348 | 36% helix, 16% strand | A0A0A0VDJ9 |
Pockets
1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 343 | 0.57 | 0.76 | 40 | empty |
Compared structures
- 5EPD · Crystal structure of Glycerol Trinitrate Reductase XdpB from Agrobacterium sp. R89-1 (Apo… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A0A0A0VDJ9
- Elsewhere: RCSB PDB 5EPD · PDBe 5EPD · UniProt A0A0A0VDJ9
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