MolNFT v1 · #117976 · protein
Crystal structure of the complex of DPR6 domain 1 bound to dip-alpha domain 1+2
5EO9 · DPR6, isoform C: “Crystal structure of the complex of DPR6 domain 1 bound to dip-alpha domain 1+2”. X-ray diffraction, 2 ligands (NAG, SO4). MolNFT v1 #117976 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 5EO9
- Type
- protein
- Length
- 312 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- DPR6, isoform C; CG32791, isoform a
- UniProt
- M9PC40, Q9W4R3
- Ligands
- NAG, SO4
Structure
x-ray diffraction · 2 distinct chains · 4% helix, 55% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | DPR6, isoform C | protein | 107 | 6% helix, 50% strand | M9PC40 |
| B | CG32791, isoform a | protein | 205 | 3% helix, 57% strand | Q9W4R3 |
Ligands and binding sites
- NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose · sugar · 3 copies · chains A, B
- SO4 · Sulfate ion · ion · 4 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Interfaces
1 interface between chains.
- A–B · 961 Ų buried · 14 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 3 disulfide, 3 glycan (disulfide, N-glycosylation).
Compared structures
- 5EO9 · Crystal Structure of the complex of Dpr6 Domain 1 bound to DIP-alpha Domain 1+2 · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt M9PC40
- Every structure of UniProt Q9W4R3
- Elsewhere: RCSB PDB 5EO9 · PDBe 5EO9 · UniProt M9PC40 · UniProt Q9W4R3
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