MolNFT v1 · #117975 · protein

Crystal structure of AOL(868)

5EO8 · Predicted protein: “Crystal structure of AOL(868)”. X-ray diffraction, 1 ligand (TFU), 3 pockets (best druggability 0.77). MolNFT v1 #117975 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 5EO8
Type: protein
Length: 311 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Predicted protein
UniProt: Q2UNX8
Ligands: TFU
Pockets: 3 · best druggability 0.77

Structure

x-ray diffraction · 1 distinct chain · 3% helix, 53% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Predicted protein	protein	311	3% helix, 53% strand	Q2UNX8

Ligands and binding sites

TFU · methyl 1-seleno-beta-L-fucopyranoside · ligand · 6 copies · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

3 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	606	0.77	0.83	71	empty
2	57	0.30	0.75	16	TFU
3	51	0.28	0.74	15	TFU

Compared structures

5EO8 · Crystal structure of AOL(868) · the same entry in another collection · chain A against A, TM-score 1.00
Q2UNX8 · AlphaFold monomer V2.0 prediction for fucose-specific lectin (Q2UNX8) · a predicted model of the same protein · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q2UNX8
Elsewhere: RCSB PDB 5EO8 · PDBe 5EO8 · UniProt Q2UNX8

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