MolNFT v1 · #117974 · protein
Crystal structure of aol
5EO7 · Predicted protein: “Crystal structure of aol”. X-ray diffraction, 2 ligands (SFU, SO4), 5 pockets (best druggability 0.85). MolNFT v1 #117974 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 5EO7
- Type
- protein
- Length
- 930 residues
- Chains
- 3
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Predicted protein
- UniProt
- Q2UNX8
- Ligands
- SFU, SO4
- Pockets
- 5 · best druggability 0.85
Structure
x-ray diffraction · 1 distinct chain · 4% helix, 51% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B, C | Predicted protein | protein | 310 | 4% helix, 51% strand | Q2UNX8 |
Ligands and binding sites
- SFU · methyl 1-seleno-alpha-L-fucopyranoside · ligand · 15 copies · chains A, B, C
- SO4 · Sulfate ion · ion · 4 copies · chains A, C
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
5 pockets found on a 1 Å grid, 3 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 1109 | 0.85 | 0.86 | 129 | empty |
| 2 | 521 | 0.77 | 0.85 | 54 | empty |
| 3 | 508 | 0.76 | 0.84 | 51 | empty |
| 4 | 67 | 0.31 | 0.75 | 19 | empty |
| 5 | 74 | 0.31 | 0.73 | 18 | empty |
Interfaces
1 interface between chains.
- B–C · 1137 Ų buried · 13 hydrogen bonds · protein-protein
Compared structures
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q2UNX8
- Elsewhere: RCSB PDB 5EO7 · PDBe 5EO7 · UniProt Q2UNX8
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