MolNFT v1 · #11794 · protein
Crystal structure of ychn protein from E.COLI
1JX7 · Hypothetical protein ychn: “Crystal structure of ychn protein from E.COLI”. X-ray diffraction, 4 pockets (best druggability 0.82). MolNFT v1 #11794 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 1JX7
- Type
- protein
- Length
- 702 residues
- Chains
- 6
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Hypothetical protein ychn
- UniProt
- P0AB52
- Pockets
- 4 · best druggability 0.82
Structure
x-ray diffraction · 1 distinct chain · 38% helix, 22% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B, C, D, E, F | Hypothetical protein ychn | protein | 117 | 38% helix, 22% strand | P0AB52 |
Pockets
4 pockets found on a 1 Å grid, 4 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 1114 | 0.82 | 0.84 | 75 | empty |
| 2 | 239 | 0.72 | 0.87 | 31 | empty |
| 3 | 255 | 0.71 | 0.86 | 36 | empty |
| 4 | 214 | 0.68 | 0.85 | 35 | empty |
Interfaces
12 interfaces between chains.
- B–C · 748 Ų buried · 13 hydrogen bonds · protein-protein
- D–E · 744 Ų buried · 13 hydrogen bonds · protein-protein
- A–B · 741 Ų buried · 10 hydrogen bonds · protein-protein
- D–F · 735 Ų buried · 9 hydrogen bonds · protein-protein
- E–F · 732 Ų buried · 12 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 18 modified (engineered).
Compared structures
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P0AB52
- Elsewhere: RCSB PDB 1JX7 · PDBe 1JX7 · UniProt P0AB52
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