MolNFT v1 · #117899 · protein

Crystal structure of mugwort allergen art V 4

5EM0 · Pollen allergen art V 4.01: “Crystal structure of mugwort allergen art V 4”. X-ray diffraction, 1 ligand (NA). MolNFT v1 #117899 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 5EM0
Type: protein
Length: 134 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Pollen allergen art V 4.01
UniProt: Q8H2C9
Ligands: NA

Structure

x-ray diffraction · 1 distinct chain · 31% helix, 31% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Pollen allergen art V 4.01	protein	134	31% helix, 31% strand	Q8H2C9

Ligands and binding sites

NA · Sodium ion · metal · chains A
EPE · 4-(2-hydroxyethyl)-1-piperazine ethanesulfonic acid · additive · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Modifications

Observed in the structure: 1 disulfide, 1 modified (disulfide, artifact).

Compared structures

5EM0 · Crystal structure of mugwort allergen Art v 4 · the same entry in another collection · chain A against A, TM-score 1.00
Q8H2C9 · AlphaFold monomer V2.0 prediction for profilin-1 (Q8H2C9) · a predicted model of the same protein · chain A against A, TM-score 0.99

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q8H2C9
Elsewhere: RCSB PDB 5EM0 · PDBe 5EM0 · UniProt Q8H2C9

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