MolNFT v1 · #117826 · protein
Thermally annealed ferryl cytochrome C peroxidase crystal structure
5EJT · Cytochrome C peroxidase, mitochondrial: “Thermally annealed ferryl cytochrome C peroxidase crystal structure”. X-ray diffraction, 2 ligands (HEM, PO4), 3 pockets (best druggability 0.80). MolNFT v1 #117826 on GenesisL1: 3D…
- PDB
- 5EJT
- Type
- protein
- Length
- 294 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Cytochrome C peroxidase, mitochondrial
- EC
- 1.11.1.5
- UniProt
- P00431
- Ligands
- HEM, PO4
- Pockets
- 3 · best druggability 0.80
Structure
x-ray diffraction · 1 distinct chain · 50% helix, 7% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Cytochrome C peroxidase, mitochondrial (EC 1.11.1.5) | protein | 294 | 50% helix, 7% strand | P00431 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
3 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 341 | 0.80 | 0.90 | 45 | HEM |
| 2 | 89 | 0.41 | 0.78 | 18 | empty |
| 3 | 51 | 0.35 | 0.79 | 20 | empty |
Compared structures
- 5EJT · Thermally annealed ferryl Cytochrome C Peroxidase crystal structure · the same entry in another collection · chain A against A, TM-score 1.00
- P00431 · AlphaFold monomer V2.0 prediction for cytochrome C peroxidase, mitochondrial (P00431) · a predicted model of the same protein · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P00431
- Elsewhere: RCSB PDB 5EJT · PDBe 5EJT · UniProt P00431
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