MolNFT v1 · #117801 · protein

Crystal structure of XLNB2

5EJ3 · Endo-1,4-beta-xylanase B: “Crystal structure of XLNB2”. X-ray diffraction, 3 pockets (best druggability 0.56). MolNFT v1 #117801 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 5EJ3
Type: protein
Length: 382 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Endo-1,4-beta-xylanase B
EC: 3.2.1.8
UniProt: P26515
Pockets: 3 · best druggability 0.56

Structure

x-ray diffraction · 1 distinct chain · 5% helix, 61% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A, B	Endo-1,4-beta-xylanase B (EC 3.2.1.8)	protein	191	5% helix, 61% strand	P26515

Pockets

3 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	387	0.56	0.74	46	empty
2	197	0.53	0.78	29	empty
3	86	0.32	0.73	23	empty

Interfaces

1 interface between chains.

A–B · 191 Å² buried · 2 hydrogen bonds · protein-protein

Compared structures

5EJ3 · Crystal structure of XlnB2 · the same entry in another collection · chain A against A, TM-score 1.00
P26515 · AlphaFold monomer V2.0 prediction for endo-1,4-beta-xylanase B (P26515) · a predicted model of the same protein · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P26515
Elsewhere: RCSB PDB 5EJ3 · PDBe 5EJ3 · UniProt P26515

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