MolNFT v1 · #117707 · protein
Structure of the adeno-associated virus serotype 1 sialic acid complex
5EGC · Capsid protein: “Structure of the adeno-associated virus serotype 1 sialic acid complex”. X-ray diffraction, 2 ligands (SIA, MG), 6 pockets (best druggability 0.58). MolNFT v1 #117707 on GenesisL1: 3D structure, binding sites and…
- PDB
- 5EGC
- Type
- protein
- Length
- 520 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Capsid protein
- UniProt
- Q9WBP8
- Ligands
- SIA, MG
- Pockets
- 6 · best druggability 0.58
Structure
x-ray diffraction · 1 distinct chain · 8% helix, 34% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Capsid protein | protein | 520 | 8% helix, 34% strand | Q9WBP8 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
6 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 415 | 0.58 | 0.74 | 56 | empty |
| 2 | 216 | 0.55 | 0.78 | 36 | empty |
| 3 | 159 | 0.49 | 0.77 | 23 | empty |
| 4 | 136 | 0.43 | 0.75 | 32 | empty |
| 5 | 128 | 0.41 | 0.75 | 20 | empty |
Compared structures
- 5EGC · Structure of the Adeno-Associated Virus Serotype 1 sialic acid complex · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9WBP8
- Elsewhere: RCSB PDB 5EGC · PDBe 5EGC · UniProt Q9WBP8
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