MolNFT v1 · #117630 · protein

Crystal structure of OSYCHF1 at pH 6.5

5EE0 · Obg-like ATPase 1: “Crystal structure of OSYCHF1 at pH 6.5”. X-ray diffraction, 4 pockets (best druggability 0.64). MolNFT v1 #117630 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 5EE0
Type: protein
Length: 364 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Obg-like ATPase 1
EC: 3.6.5.-
UniProt: Q6Z1J6
Pockets: 4 · best druggability 0.64

Structure

x-ray diffraction · 1 distinct chain · 46% helix, 19% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Obg-like ATPase 1 (EC 3.6.5.-)	protein	364	46% helix, 19% strand	Q6Z1J6

Pockets

4 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	88	0.64	0.90	26	empty
2	97	0.39	0.76	16	empty
3	67	0.34	0.76	17	empty
4	53	0.29	0.75	8	empty

Compared structures

5EE0 · Crystal structure of OsYchF1 at pH 6.5 · the same entry in another collection · chain A against A, TM-score 1.00
Q6Z1J6 · AlphaFold monomer V2.0 prediction for obg-like ATPase 1 (Q6Z1J6) · a predicted model of the same protein · chain A against A, TM-score 0.97

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q6Z1J6
Elsewhere: RCSB PDB 5EE0 · PDBe 5EE0 · UniProt Q6Z1J6

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