MolNFT v1 · #117555 · protein
Joint X-RAY/NEUTRON structure of reversibly photoswitching chromogenic protein, dathail
5EBJ: “Joint X-RAY/NEUTRON structure of reversibly photoswitching chromogenic protein, dathail”. Neutron diffraction; x-ray diffraction, 1 ligand (CRQ), 1 pocket (best druggability 0.79). MolNFT v1 #117555 on GenesisL1: 3D structure…
- PDB
- 5EBJ
- Type
- protein
- Length
- 213 residues
- Chains
- 1
- Method
- neutron diffraction; x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Photoswitching chromogenic protein
- Ligands
- CRQ
- Pockets
- 1 · best druggability 0.79
Structure
neutron diffraction; x-ray diffraction · 1 distinct chain · 5% helix, 58% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Photoswitching chromogenic protein | protein | 213 | 5% helix, 58% strand | — |
Ligands and binding sites
- CRQ · [2-(3-carbamoyl-1-imino-propyl)-4-(4-hydroxy-benzylidene)-5-oxo-4,5-dihydro-imidazol-1-yl]-acetic acid · ligand · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 132 | 0.79 | 0.97 | 34 | CRQ |
Modifications
Observed in the structure: 2 cofactor (chromophore).
Compared structures
- 5EBJ · Joint X-ray/neutron structure of reversibly photoswitching chromogenic protein, Dathail · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 5EBJ · PDBe 5EBJ
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