MolNFT v1 · #117547 · protein

Crystal structure of aromatic mutant (Y343A) of an alkali thermostable GH10 xylanase from bacillus sp. ng-27

5EBA · Beta-xylanase: “Crystal structure of aromatic mutant (Y343A) of an alkali thermostable GH10 xylanase from bacillus sp. ng-27”. X-ray diffraction, 2 ligands (MG, NA), 1 pocket (best druggability 0.50). MolNFT v1 #117547 on GenesisL1…

PDB: 5EBA
Type: protein
Length: 354 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Beta-xylanase
EC: 3.2.1.8
UniProt: O30700
Ligands: MG, NA
Pockets: 1 · best druggability 0.50

Structure

x-ray diffraction · 1 distinct chain · 44% helix, 16% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Beta-xylanase (EC 3.2.1.8)	protein	354	44% helix, 16% strand	O30700

Ligands and binding sites

MG · Magnesium ion · metal · chains A
NA · Sodium ion · metal · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	125	0.50	0.80	28	empty

Compared structures

5EBA · Crystal structure of aromatic mutant (Y343A) of an alkali thermostable GH10 xylanase from… · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt O30700
Elsewhere: RCSB PDB 5EBA · PDBe 5EBA · UniProt O30700

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