MolNFT v1 · #117440 · protein
Crystal structure of the S. cerevisiae RTF1 histone modification domain mutant R126A
5E8B · RNA polymerase-associated protein RTF1: “Crystal structure of the S. cerevisiae RTF1 histone modification domain mutant R126A”. X-ray diffraction, 2 ligands (BEN, NA). MolNFT v1 #117440 on GenesisL1: 3D structure, binding sites and…
- PDB
- 5E8B
- Type
- protein
- Length
- 106 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- RNA polymerase-associated protein RTF1
- UniProt
- P53064
- Ligands
- BEN, NA
Structure
x-ray diffraction · 2 distinct chains · 66% helix, 4% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | RNA polymerase-associated protein RTF1 | protein | 54 | 67% helix, 4% strand | P53064 |
| B | RNA polymerase-associated protein RTF1 | protein | 52 | 65% helix, 4% strand | P53064 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Interfaces
1 interface between chains.
- A–B · 167 Ų buried · 11 hydrogen bonds · protein-protein
Compared structures
- 5E8B · Crystal structure of the S. cerevisiae Rtf1 histone modification domain mutant R126A · the same entry in another collection · chain A against A, TM-score 1.00
- P53064 · AlphaFold monomer V2.0 prediction for RNA polymerase-associated protein RTF1 (P53064) · a predicted model of the same protein · chain B against A, TM-score 0.97
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P53064
- Elsewhere: RCSB PDB 5E8B · PDBe 5E8B · UniProt P53064
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