MolNFT v1 · #117429 · protein

Ligand binding domain 1 of penicillium marneffei MP1 protein in complex with palmitic acid

5E7X · Cell wall antigen: “Ligand binding domain 1 of penicillium marneffei MP1 protein in complex with palmitic acid”. X-ray diffraction, 1 ligand (PLM), 1 pocket (best druggability 0.83). MolNFT v1 #117429 on GenesisL1: 3D structure…

PDB: 5E7X
Type: protein
Length: 155 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Cell wall antigen
UniProt: A0A093VKV7
Ligands: PLM
Pockets: 1 · best druggability 0.83

Structure

x-ray diffraction · 1 distinct chain · 83% helix, 0% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Cell wall antigen	protein	155	83% helix, 0% strand	A0A093VKV7

Ligands and binding sites

PLM · Palmitic acid · ligand · chains A
ACT · Acetate ion · additive · chains A
GOL · Glycerol · additive · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	230	0.83	0.95	38	PLM

Compared structures

5E7X · Ligand binding domain 1 of Penicillium marneffei MP1 protein in complex with palmitic acid · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt A0A093VKV7
Elsewhere: RCSB PDB 5E7X · PDBe 5E7X · UniProt A0A093VKV7

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