MolNFT v1 · #11732 · DNA
Dimeric DNA quadruplex containing major groove-aligned A.T.A.T and G.C.G.C tetrads stabilized by inter-subunit watson-crick A:T and G:C pairs
1JVC · 5'-D(*GP*AP*GP*CP*AP*GP*GP*T)-3': “Dimeric DNA quadruplex containing major groove-aligned A.T.A.T and G.C.G.C tetrads stabilized by…”. Solution nmr. MolNFT v1 #11732 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 1JVC
- Type
- DNA
- Length
- 16 nucleotides
- Chains
- 2
- Method
- solution nmr
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- 5'-D(*GP*AP*GP*CP*AP*GP*GP*T)-3'
Structure
solution nmr · 1 distinct chain.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | 5'-D(*GP*AP*GP*CP*AP*GP*GP*T)-3' | dna | 8 | — | — |
Interfaces
1 interface between chains.
- A–B · 393 Ų buried · 41 hydrogen bonds · nucleic-nucleic
Compared structures
- 1JVC · Dimeric DNA Quadruplex Containing Major Groove-Aligned A.T.A.T and G.C.G.C Tetrads… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 1JVC · PDBe 1JVC
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