MolNFT v1 · #117300 · protein
Crystal structure of thermostable carboxypeptidase (fiscp) from fervidobacterium islandicum aw-1
5E3X · Thermostable carboxypeptidase 1: “Crystal structure of thermostable carboxypeptidase (fiscp) from fervidobacterium islandicum aw-1”. X-ray diffraction, 1 ligand (CO), 4 pockets (best druggability 0.79). MolNFT v1 #117300 on…
- PDB
- 5E3X
- Type
- protein
- Length
- 489 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Thermostable carboxypeptidase 1
- Ligands
- CO
- Pockets
- 4 · best druggability 0.79
Structure
x-ray diffraction · 1 distinct chain · 67% helix, 3% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Thermostable carboxypeptidase 1 | protein | 489 | 67% helix, 3% strand | — |
Ligands and binding sites
- CO · Cobalt (II) ion · metal · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
4 pockets found on a 1 Å grid, 3 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 663 | 0.79 | 0.83 | 74 | empty |
| 2 | 417 | 0.73 | 0.84 | 45 | empty |
| 3 | 128 | 0.56 | 0.82 | 19 | empty |
| 4 | 69 | 0.47 | 0.83 | 20 | empty |
Compared structures
- 5E3X · Crystal structure of thermostable Carboxypeptidase (FisCP) from Fervidobacterium… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 5E3X · PDBe 5E3X
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