MolNFT v1 · #117279 · protein
Structure of macrodomain protein from streptomyces coelicolor
5E3B: “Structure of macrodomain protein from streptomyces coelicolor”. X-ray diffraction, 1 ligand (NA), 1 pocket (best druggability 0.51). MolNFT v1 #117279 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 5E3B
- Type
- protein
- Length
- 148 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Macrodomain protein
- UniProt
- Q9X7P1
- Ligands
- NA
- Pockets
- 1 · best druggability 0.51
Structure
x-ray diffraction · 1 distinct chain · 36% helix, 26% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Macrodomain protein | protein | 148 | 36% helix, 26% strand | Q9X7P1 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 171 | 0.51 | 0.78 | 35 | EDO |
Compared structures
- 5E3B · Structure of macrodomain protein from Streptomyces coelicolor · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9X7P1
- Elsewhere: RCSB PDB 5E3B · PDBe 5E3B · UniProt Q9X7P1
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