MolNFT v1 · #117230 · protein
Crystal structure of the organohalide sensing rdhr-CBDBA1625 transcriptional regulator in the 3,4-dichlorophenol bound form
5E1X · Transcriptional regulator, marr family: “Crystal structure of the organohalide sensing rdhr-CBDBA1625 transcriptional regulator in the…”. X-ray diffraction, 1 ligand (5JD), 1 pocket (best druggability 0.65). MolNFT v1 #117230 on…
- PDB
- 5E1X
- Type
- protein
- Length
- 168 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Transcriptional regulator, marr family
- UniProt
- M1R817
- Ligands
- 5JD
- Pockets
- 1 · best druggability 0.65
Structure
x-ray diffraction · 1 distinct chain · 62% helix, 7% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Transcriptional regulator, marr family | protein | 168 | 62% helix, 7% strand | M1R817 |
Ligands and binding sites
- 5JD · 3,4-dichlorophenol · ligand · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 741 | 0.65 | 0.74 | 40 | 5JD |
Compared structures
- 5E1X · Crystal structure of the organohalide sensing RdhR-CbdbA1625 transcriptional regulator in… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt M1R817
- Elsewhere: RCSB PDB 5E1X · PDBe 5E1X · UniProt M1R817
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