MolNFT v1 · #117168 · protein
Crystal structure of andes virus nucleoprotein
5E04: “Crystal structure of andes virus nucleoprotein”. X-ray diffraction, 8 pockets (best druggability 0.73). MolNFT v1 #117168 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 5E04
- Type
- protein
- Length
- 546 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Nucleoprotein
- UniProt
- O36307
- Pockets
- 8 · best druggability 0.73
Structure
x-ray diffraction · 2 distinct chains · 53% helix, 6% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Nucleoprotein | protein | 281 | 53% helix, 6% strand | O36307 |
| B | Nucleoprotein | protein | 265 | 53% helix, 7% strand | O36307 |
Pockets
8 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 780 | 0.73 | 0.78 | 57 | empty |
| 2 | 135 | 0.48 | 0.79 | 26 | empty |
| 3 | 82 | 0.46 | 0.81 | 18 | empty |
| 4 | 189 | 0.45 | 0.74 | 31 | empty |
| 5 | 57 | 0.30 | 0.75 | 15 | empty |
Interfaces
1 interface between chains.
- A–B · 868 Ų buried · 1 hydrogen bond · protein-protein
Compared structures
- 5E04 · Crystal structure of Andes virus nucleoprotein · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt O36307
- Elsewhere: RCSB PDB 5E04 · PDBe 5E04 · UniProt O36307
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