MolNFT v1 · #117139 · protein
6BETA1
5DZB: “6BETA1”. X-ray diffraction, 3 pockets (best druggability 0.55). MolNFT v1 #117139 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 5DZB
- Type
- protein
- Length
- 1,398 residues
- Chains
- 6
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- 6BETA1
- Pockets
- 3 · best druggability 0.55
Structure
x-ray diffraction · 1 distinct chain · 10% helix, 18% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B, C, D, E, F | 6BETA1 | protein | 233 | 10% helix, 18% strand | — |
Pockets
3 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 390 | 0.55 | 0.74 | 53 | empty |
| 2 | 56 | 0.26 | 0.74 | 18 | empty |
| 3 | 50 | 0.22 | 0.72 | 13 | empty |
Interfaces
5 interfaces between chains.
- C–E · 757 Ų buried · 16 hydrogen bonds · protein-protein
- A–B · 677 Ų buried · 6 hydrogen bonds · protein-protein
- E–F · 674 Ų buried · 5 hydrogen bonds · protein-protein
- C–D · 674 Ų buried · 7 hydrogen bonds · protein-protein
- A–E · 15 Ų buried · 0 hydrogen bonds · protein-protein
Compared structures
- 5DZB · 6beta1 · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 5DZB · PDBe 5DZB
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