MolNFT v1 · #117092 · protein
Crystal of amtr from corynebacterium glutamicum
5DXZ · Tetr family transcriptional regulator: “Crystal of amtr from corynebacterium glutamicum”. X-ray diffraction, 1 ligand (SO4), 2 pockets (best druggability 0.36). MolNFT v1 #117092 on GenesisL1: 3D structure, binding sites and pockets…
- PDB
- 5DXZ
- Type
- protein
- Length
- 199 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Tetr family transcriptional regulator
- UniProt
- A0A072Z681
- Ligands
- SO4
- Pockets
- 2 · best druggability 0.36
Structure
x-ray diffraction · 1 distinct chain · 72% helix, 0% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Tetr family transcriptional regulator | protein | 199 | 72% helix, 0% strand | A0A072Z681 |
Ligands and binding sites
- SO4 · Sulfate ion · ion · 5 copies · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 82 | 0.36 | 0.76 | 16 | empty |
| 2 | 57 | 0.31 | 0.75 | 12 | empty |
Compared structures
- 5DXZ · Crystal of AmtR from Corynebacterium glutamicum · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A0A072Z681
- Elsewhere: RCSB PDB 5DXZ · PDBe 5DXZ · UniProt A0A072Z681
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