MolNFT v1 · #117071 · protein

Crystal structure of putative beta-glucanase (RV0315 ortholog) from mycobacterium abscessus

5DXD: “Crystal structure of putative beta-glucanase (RV0315 ortholog) from mycobacterium abscessus”. X-ray diffraction, 1 ligand (NA), 3 pockets (best druggability 0.67). MolNFT v1 #117071 on GenesisL1: 3D structure, binding sites and…

PDB: 5DXD
Type: protein
Length: 466 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Putative beta-glucanase
UniProt: B1MNM2
Ligands: NA
Pockets: 3 · best druggability 0.67

Structure

x-ray diffraction · 1 distinct chain · 3% helix, 45% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A, B	Putative beta-glucanase	protein	233	3% helix, 45% strand	B1MNM2

Ligands and binding sites

NA · Sodium ion · metal · 2 copies · chains A, B

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

3 pockets found on a 1 Å grid, 3 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	574	0.67	0.77	51	empty
2	144	0.58	0.83	24	empty
3	307	0.57	0.76	44	empty

Interfaces

1 interface between chains.

A–B · 706 Å² buried · 7 hydrogen bonds · protein-protein

Compared structures

5DXD · Crystal structure of Putative beta-glucanase (Rv0315 ortholog) from Mycobacterium… · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt B1MNM2
Elsewhere: RCSB PDB 5DXD · PDBe 5DXD · UniProt B1MNM2

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