MolNFT v1 · #117057 · DNA
Structural insights into the quadruplex-duplex 3' interface formed from a telomeric repeat - tloop
5DWX · DNA (24-mer): “Structural insights into the quadruplex-duplex 3' interface formed from a telomeric repeat - tloop”. X-ray diffraction, 1 ligand (K). MolNFT v1 #117057 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 5DWX
- Type
- DNA
- Length
- 24 nucleotides
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- DNA (24-mer); DNA complementary strand
- Ligands
- K
Structure
x-ray diffraction · 2 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | DNA (24-mer) | dna | 20 | — | — |
| B | DNA complementary strand | dna | 4 | — | — |
Ligands and binding sites
- K · Potassium ion · metal · 3 copies · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Interfaces
1 interface between chains.
- A–B · 367 Ų buried · 24 hydrogen bonds · nucleic-nucleic
Compared structures
- 5DWX · Structural Insights into the Quadruplex-Duplex 3' Interface formed from a Telomeric… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 5DWX · PDBe 5DWX
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