MolNFT v1 · #1170 · protein
Azotobacter vinelandii periplasmic molybdate-binding protein
1ATG: “Azotobacter vinelandii periplasmic molybdate-binding protein”. X-ray diffraction, 2 ligands (WO4, SO4), 1 pocket (best druggability 0.38). MolNFT v1 #1170 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 1ATG
- Type
- protein
- Length
- 231 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Periplasmic molybdate-binding protein
- UniProt
- Q7SIH2
- Ligands
- WO4, SO4
- Pockets
- 1 · best druggability 0.38
Structure
x-ray diffraction · 1 distinct chain · 39% helix, 22% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Periplasmic molybdate-binding protein | protein | 231 | 39% helix, 22% strand | Q7SIH2 |
Ligands and binding sites
- WO4 · Tungstate(vi)ion · ion · chains A
- SO4 · Sulfate ion · ion · chains A
- EDO · 1,2-ethanediol · additive · 2 copies · chains A
- ACT · Acetate ion · additive · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 79 | 0.38 | 0.77 | 19 | empty |
Compared structures
- 1ATG · Azotobacter vinelandii periplasmic molybdate-binding protein · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q7SIH2
- Elsewhere: RCSB PDB 1ATG · PDBe 1ATG · UniProt Q7SIH2
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