MolNFT v1 · #116999 · protein
Structure of S. pneumoniae D39 sortase a
5DV0 · Sortase srta: “Structure of S. pneumoniae D39 sortase a”. X-ray diffraction, 2 pockets (best druggability 0.56). MolNFT v1 #116999 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 5DV0
- Type
- protein
- Length
- 169 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Sortase srta
- UniProt
- A0A0U0ITY4
- Pockets
- 2 · best druggability 0.56
Structure
x-ray diffraction · 1 distinct chain · 19% helix, 22% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Sortase srta | protein | 169 | 19% helix, 22% strand | A0A0U0ITY4 |
Pockets
2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 269 | 0.56 | 0.77 | 22 | empty |
| 2 | 57 | 0.31 | 0.76 | 16 | empty |
Compared structures
- 5DV0 · Structure of S. pneumoniae D39 sortase A · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A0A0U0ITY4
- Elsewhere: RCSB PDB 5DV0 · PDBe 5DV0 · UniProt A0A0U0ITY4
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