MolNFT v1 · #116878 · protein

Aurora a kinase in complex with ATP in space group P6122

5DRD · Aurora kinase a: “Aurora a kinase in complex with ATP in space group P6122”. X-ray diffraction, 2 ligands (ATP, MG), 1 pocket (best druggability 0.74). MolNFT v1 #116878 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 5DRD
Type: protein
Length: 259 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Aurora kinase a
EC: 2.7.11.1
UniProt: O14965
Ligands: ATP, MG
Pockets: 1 · best druggability 0.74

Structure

x-ray diffraction · 1 distinct chain · 43% helix, 20% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Aurora kinase a (EC 2.7.11.1)	protein	259	43% helix, 20% strand	O14965

Ligands and binding sites

ATP · Adenosine-5'-triphosphate · ligand · chains A
MG · Magnesium ion · metal · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	428	0.74	0.83	50	MG, ATP

Compared structures

5DRD · Aurora A Kinase in Complex with ATP in Space Group P6122 · the same entry in another collection · chain A against A, TM-score 1.00
O14965 · AlphaFold monomer V2.0 prediction for aurora kinase a (O14965) · a predicted model of the same protein · chain A against A, TM-score 0.98

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt O14965
Elsewhere: RCSB PDB 5DRD · PDBe 5DRD · UniProt O14965

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