MolNFT v1 · #11687 · RNA

Dimer initiation sequence of HIV-1LAI genomic RNA: NMR solution structure of the extended duplex

1JU1 · HIV-1LAI SL1: “Dimer initiation sequence of HIV-1LAI genomic RNA: NMR solution structure of the extended duplex”. Solution nmr, 1 pocket (best druggability 0.47). MolNFT v1 #11687 on GenesisL1: 3D structure, binding sites and…

PDB: 1JU1
Type: RNA
Length: 46 nucleotides
Chains: 2
Method: solution nmr
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: HIV-1LAI SL1
Pockets: 1 · best druggability 0.47

Structure

solution nmr · 1 distinct chain.

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A, B	HIV-1LAI SL1	rna	23	—	—

Pockets

1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	258	0.47	0.74	19	empty

Interfaces

1 interface between chains.

A–B · 1197 Å² buried · 125 hydrogen bonds · nucleic-nucleic

Compared structures

1JU1 · Dimer Initiation Sequence of HIV-1Lai Genomic RNA: NMR Solution Structure of the Extended… · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Elsewhere: RCSB PDB 1JU1 · PDBe 1JU1

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