MolNFT v1 · #116711 · protein

Crystal structure of the plantazolicin methyltransferase baml in complex with monoazolic desmethylpzn analog and sah

5DLY: “Crystal structure of the plantazolicin methyltransferase baml in complex with monoazolic desmethylpzn analog…”. X-ray diffraction, 2 ligands (5D7, SAH), 1 pocket (best druggability 0.83). MolNFT v1 #116711 on GenesisL1: 3D…

PDB: 5DLY
Type: protein
Length: 266 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Plantazolicin methyltransferase baml
UniProt: A7Z2A9
Ligands: 5D7, SAH
Pockets: 1 · best druggability 0.83

Structure

x-ray diffraction · 1 distinct chain · 55% helix, 18% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Plantazolicin methyltransferase baml	protein	266	55% helix, 18% strand	A7Z2A9

Ligands and binding sites

5D7 · prop-2-en-1-yl 2-[(1S)-1-amino-4-carbamimidamidobutyl]-1,3-thiazole-4-carboxylate · ligand · chains A
SAH · S-adenosyl-L-homocysteine · ligand · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	462	0.83	0.90	62	5D7, SAH

Compared structures

5DLY · Crystal structure of the plantazolicin methyltransferase BamL in complex with monoazolic… · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt A7Z2A9
Elsewhere: RCSB PDB 5DLY · PDBe 5DLY · UniProt A7Z2A9

GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.