MolNFT v1 · #116668 · protein

The structure of escherichia COLI zapd

5DKO · Cell division protein zapd: “The structure of escherichia COLI zapd”. X-ray diffraction, 1 ligand (SO4), 1 pocket (best druggability 0.27). MolNFT v1 #116668 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 5DKO
Type: protein
Length: 245 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Cell division protein zapd
UniProt: P36680
Ligands: SO4
Pockets: 1 · best druggability 0.27

Structure

x-ray diffraction · 1 distinct chain · 50% helix, 18% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Cell division protein zapd	protein	245	50% helix, 18% strand	P36680

Ligands and binding sites

SO4 · Sulfate ion · ion · 3 copies · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	55	0.27	0.73	10	empty

Compared structures

5DKO · The structure of Escherichia coli ZapD · the same entry in another collection · chain A against A, TM-score 1.00
P36680 · AlphaFold monomer V2.0 prediction for cell division protein zapd (P36680) · a predicted model of the same protein · chain A against A, TM-score 0.99

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P36680
Elsewhere: RCSB PDB 5DKO · PDBe 5DKO · UniProt P36680

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