MolNFT v1 · #116666 · protein

S. erythraea trypsin michaelis-menten complex

5DKM: “S. erythraea trypsin michaelis-menten complex”. X-ray diffraction, 1 pocket (best druggability 0.37). MolNFT v1 #116666 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 5DKM
Type: protein
Length: 230 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Trypsin
EC: 3.4.21.4
UniProt: Q54137
Pockets: 1 · best druggability 0.37

Structure

x-ray diffraction · 1 distinct chain · 15% helix, 35% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Trypsin (EC 3.4.21.4)	protein	230	15% helix, 35% strand	Q54137

Pockets

1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	59	0.37	0.80	21	empty

Modifications

Observed in the structure: 3 disulfide (disulfide).

Compared structures

5DKM · S. erythraea trypsin Michaelis-Menten complex · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q54137
Elsewhere: RCSB PDB 5DKM · PDBe 5DKM · UniProt Q54137

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